If you have an account with the Point of Sale Merchant Service, you can include batch settlement of your authorized credit and debit card transactions in the End of Day procedure: Choose Point of Sale > End of Day Procedure.
Note: You do not need to settle manually in Point of Sale 2013. The charges will be settled periodically and behind the scenes throughout the day.
The settlement process is automated. All you need to do is select the Send Merchant Service Batch Now option on the End of Day window.
Point of Sale transmits the transactions to the merchant service for settlement. Once the data is transmitted, the Point of Sale Merchant Service routes the transaction to the bank that issued the card, secures the funds, and then transfers the money to your bank account.
If this solution does not resolve the issue, you can read discussions and post messages and questions relating to your issue on the Intuit QuickBooks Community site. You can also review other available QuickBooks Point of Sale support options for additional guidance.