You may need to reprint your 1009's because 1) one or more 1099 was incorrect or 2) one or more vendors was omitted from the original printing. Before printing 1099s, you will need to:
CAUTION: Because paper forms are scanned during processing, you cannot file with the IRS Forms 1096, 1097, 1098, 109, 3921, 39,22, or 5498 that you print from the IRS website.
CAUTION: Printing corrected 1099s with changes to payee SSN or EIN number or incorrect name and address: Per IRS publication "2012 General Instructions for Certain Information Returns", the IRS requires a zero value for all money fields for these types of corrections. QuickBooks will not allow you to change the money fields to zero (this is a QuickBooks product limitation); zero dollar amounts will need to be entered manually.
If these steps do not resolve the issue, you can read discussions and post messages and questions relating to your issue on the Intuit QuickBooks Community site for free or you can contact a technical support agent for additional guidance. Fees may apply.